Objective: To investigate the pesticide residues in imported fruits in Beijing, and to provide a reference basis for the early warning of food safety risks and the formulation of trade policies on imported fruits in our country. Methods: 60 batches of imported fruit samples from 13 countries/regions such as New Zealand, Australia, the Philippines, the United States and so on were studied, 725 pesticide residues were screened by GC/LC-Q-TOF/MS. Results: Among 60 batches of samples, 55 batches were detected pesticide residues with the detection rate of 91.67%, and 2 batches to be over-standard with the detection rate of 3.33%. 74 kinds of pesticide residues were detected among 725 screening items, most of which were low-toxic, and the detection rates were 6.70% for pyraclostrobin, 5.90% for spirotetramat, 4.82% for trifloxystrobin and 4.29% for fluazolamide. Conclusion: The detection rate of pesticide residues in imported fruits in Beijing was high. The results indicate that the overall pesticide residues in imported fruits are at safe levels.